Index

A

AcvdOptions (class in seg2mesh.config)

add_scalardict_to_field_data() (in module seg2mesh.smesh)

C

calculate_classification_metrics (seg2mesh.config.SurfaceMeshPipeline attribute) calculate_distance_metrics (seg2mesh.config.SurfaceMeshPipeline attribute) clean_poly() (in module seg2mesh.smesh) close (seg2mesh.config.SegmentationProcessing attribute) closing_radius (seg2mesh.config.SegmentationProcessing attribute)

compute_normals() (in module seg2mesh.smesh) constrained_laplacian_smooth() (in module seg2mesh.smesh) contiguous_closing_radius (seg2mesh.config.SegmentationProcessing attribute) convert_segmentation_to_vtk() (in module seg2mesh.vol) create_canvas_for_volumes() (in module seg2mesh.vol) create_lut_from_label_image() (in module seg2mesh.vol)

D

divisions_per_circle (seg2mesh.config.MmgOptions attribute)

E

edge_length (seg2mesh.config.AcvdOptions attribute) evaluate_distance_metrics() (in module seg2mesh.smesh)

evaluate_polydata_distance() (in module seg2mesh.smesh) evaluate_volume_metrics() (in module seg2mesh.smesh) extract_isocontours() (in module seg2mesh.smesh)

G

get_compatible_origin_and_size() (in module seg2mesh.smesh)

get_curvatures() (in module seg2mesh.smesh)

H

hgrad (seg2mesh.config.MmgOptions attribute)

hmax (seg2mesh.config.MmgOptions attribute) hmin (seg2mesh.config.MmgOptions attribute)

I

image (seg2mesh.vol.NamedLabelImage attribute) (seg2mesh.vol.NamedVTKImage attribute)

image_boolean() (in module seg2mesh.smesh)

L

label_file (seg2mesh.config.SurfaceMeshPipeline attribute) lut (seg2mesh.config.SegmentationPipeline attribute) (seg2mesh.vol.NamedLabelImage attribute) (seg2mesh.vol.NamedVTKImage attribute)

lut_file (seg2mesh.config.SurfaceMeshPipeline attribute)

M

main() (in module seg2mesh.smesh_pipeline) (in module seg2mesh.vol_pipeline) make_contiguous (seg2mesh.config.SegmentationProcessing attribute) make_contiguous() (in module seg2mesh.vol) mmg_remesh() (in module seg2mesh.smesh) MmgOptions (class in seg2mesh.config) model_config (seg2mesh.config.AcvdOptions attribute) (seg2mesh.config.MmgOptions attribute) (seg2mesh.config.SegmentationPipeline attribute) (seg2mesh.config.SegmentationProcessing attribute) (seg2mesh.config.SurfaceMeshPipeline attribute)

module seg2mesh.config seg2mesh.smesh seg2mesh.smesh_pipeline seg2mesh.vol seg2mesh.vol_pipeline

N

NamedLabelImage (class in seg2mesh.vol)

NamedVTKImage (class in seg2mesh.vol)

O

open_list (seg2mesh.config.SegmentationProcessing attribute) opening_radius (seg2mesh.config.SegmentationProcessing attribute)

output_formats (seg2mesh.config.SurfaceMeshPipeline attribute) output_path (seg2mesh.config.SegmentationPipeline attribute) (seg2mesh.config.SurfaceMeshPipeline attribute)

P

parse_model_from_json() (in module seg2mesh.config)

process_segmentation() (in module seg2mesh.vol) processing_options (seg2mesh.config.SegmentationPipeline attribute)

R

remesh() (in module seg2mesh.smesh) remesh_options (seg2mesh.config.SurfaceMeshPipeline attribute) remove_islands() (in module seg2mesh.smesh) (in module seg2mesh.vol)

repair_mesh() (in module seg2mesh.smesh) resample_greyscale() (in module seg2mesh.vol) resample_label_image() (in module seg2mesh.vol) resample_volumes_to_canvas() (in module seg2mesh.vol)

S

save_model_to_json() (in module seg2mesh.config) seg2mesh.config module seg2mesh.smesh module seg2mesh.smesh_pipeline module seg2mesh.vol module

seg2mesh.vol_pipeline module SegmentationPipeline (class in seg2mesh.config) SegmentationProcessing (class in seg2mesh.config) source_files (seg2mesh.config.SegmentationPipeline attribute) spur_removal_length (seg2mesh.config.SegmentationProcessing attribute) SurfaceMeshPipeline (class in seg2mesh.config)

T

target_voxel_size (seg2mesh.config.SegmentationPipeline attribute) taubin_iterations1 (seg2mesh.config.SurfaceMeshPipeline attribute) taubin_iterations2 (seg2mesh.config.SurfaceMeshPipeline attribute)

taubin_smooth() (in module seg2mesh.smesh) taubin_smoothing_factor1 (seg2mesh.config.SurfaceMeshPipeline attribute) taubin_smoothing_factor2 (seg2mesh.config.SurfaceMeshPipeline attribute)

V

voxel_edge (seg2mesh.config.SurfaceMeshPipeline attribute)

voxelize_mesh() (in module seg2mesh.smesh)